BioMed Research International

Volume 2013 (2013), Article ID 342371, 6 pages

http://dx.doi.org/10.1155/2013/342371

Research Article

UGT1A1 Gene Mutation due to Crigler-Najjar Syndrome in Iranian Patients: Identification of a Novel Mutation

Javad Mohammadi Asl,¹ Mohammad Amin Tabatabaiefar,¹ Hamid Galehdari,² Kourosh Riahi,³ Mohammad Hosein Masbi,³ Zohre Zargar Shoshtari,³ and Fakher Rahim4,5

¹Department of Medical Genetics, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran

²Genetic Department, Faculty of Science, Shahid Chamran Univerity, Ahvaz, Iran

³Pediatric Department, Ahvaz Jundishapur University of Medical Sciences, Golestan Hospital, Golestan, Ahvaz, Iran

⁴Noor Genetic Diagnostic Laboratory, Ahvaz, Iran

⁵Toxicology Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran

Received 9 April 2013; Revised 27 June 2013; Accepted 27 June 2013

Academic Editor: Thomas Liehr

Copyright © 2013 Javad Mohammadi Asl et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Abstract.

Crigler-Najjar syndrome (CNS) type I and type II are inherited as autosomal recessive conditions that are caused by mutations in the UGT1A1 gene. We present the analysis of UGT1A1 gene in 12 individuals from three different families. This analysis allowed us to identify one novel mutation, which was not previously described. In this study, three families with clinically diagnosed CNS referred from Khuzestan province, southwest Iran, were screened. After signing the informed consent, peripheral blood samples from the patients and their parents were collected in EDTA-containing tube followed by DNA extraction using a routine phenol-chloroform method. All five coding exons and the flanking intronic regions of the bilirubin-UGT were amplified by polymerase chain reaction (PCR) followed by DNA sequencing by Sanger method. From the first family, a 9-month-old boy was homozygous for a deletion mutation of two adjacent nucleotides including one adenosine (A) and one glutamine (G) between nucleotides 238 and 239 in exon 1 (c.238_240 del AG). In the second family, there were two affected individuals, an 11-year-old girl and a fetus, found to be homozygous for the same mutation. The third family showed a mutation at nucleotide 479 in exon 1 (Val160Glu) that has been reported previously. Molecular analysis can significantly help confirm the diagnosis of CNS, without any need for the liver biopsy, and may help the therapeutic management by ruling out more harmful causes of hyperbilirubinemia.

1. Introduction

Crigler-Najjar syndrome (CNS) (MIM nos. 218800, 606785) type I and type II are inherited as autosomal recessive conditions that are caused by mutations in the UGT1A1 gene (UGT1A1; MIM no. 191740) [1–6]. Type I is characterized by almost complete absence of UGT1A1 enzyme activity, in which the affected individuals are refractory to phenobarbital treatment, while type II is a less severe form of deficiency [6, 7]. Patients with CNS are at permanent risk of developing severe neurologic complications such as hearing problems, mental retardation, and choreoathetosis due to severe unconjugated hyperbilirubinemia [8]. The high performance liquid chromatography (HPLC) analysis of liver enzyme assay is the conclusive diagnosis of this syndrome [9]. The UGT1A1 gene comprises five consecutive exons located at the 3′end of the UGT1A locus on chromosome 2q37.

Mutations in the UGT1A1 gene occur in any of the five exons, which either completely (CNS-I) or partially (CNS-II) inactivate this enzyme and result in a truncated protein. Here, we present the analysis of UGT1A1 gene in 12 unrelated individuals from three different families.

2. Subjects and Methods

2.1. Cases History

Family A. The patient was a 9-month-old boy who has had jaundice 72 h after birth continuously, with high total and direct bilirubin values (Table 2). His first blood examination revealed a normal hemoglobin level (12.5 g/dL), RBC (4.89 M/μL), MCV (74.8 fL), MCH (25.6 pg), MCHC (34.2 g/dL), and platelet count (299 k/μL). Both parents (22-year-old father and 21-year-old mother) were educated with a history of mild jaundice, consanguinity, and mental disorders in their relatives. During a seven-day course of phototherapy treatment without phenobarbital, the serum bilirubin has dropped to 23 mg/dL. There was no evidence of neurotoxicity. He was transferred to our department for further diagnosis.

Family B. A pregnant woman with a fetus was referred to our department at gestational age of 18 weeks for amino synthesis. Both parents (28-year-old father and 26-year-old mother) were educated with no history of consanguinity and mental disorders in their relatives. Their other child was an 11-year-old girl with jaundice. Her first blood examination revealed hemoglobin (14.2 g/dL), RBC (5.60 M/μL), MCV (82.0 fL), MCH (25.6 pg), MCHC (31.2 g/dL), and platelet (217 k/μL). Her family history revealed that her parents had mild jaundice (Table 2). Her birth weight was 3500 g following normal pregnancy and uneventful cesarean section. This girl developed clinical jaundice by 4 days of age with total and direct bilirubin of 26 mg/dL and 1.5 mg/dL, respectively. Her hyperbilirubinemia responded to a 12-day course of phototherapy without phenobarbital, and total bilirubin was reduced to 13 mg/dL. She was discharged under phenobarbital therapy, but her hyperbilirubinemia rebounded quickly, and she was admitted again with a total bilirubin of 29 mg/dL and was transferred to our department for further diagnosis.

Family C. A consanguine couple (29-year-old male and 26-year-old female) was referred to our department for premarital genetic counseling and screening of CNS. The patient was a 29-year-old male who has had jaundice, with a total bilirubin of 8.4 mg/dL, direct bilirubin of 1.8 mg/dL, and blood examination results of hemoglobin (15.2 g/dL), RBC (4.67 M/μL), MCV (79.1 fL), MCH (24.2 pg), MCHC (32.8 g/dL), and platelet count (287 k/μL). The man had a family history of CNS. His parents (52-year-old father and 49-year-old mother) were not educated with a history of slight elevation in bilirubin (Table 2) and consanguinity and no history of mental disorders in their relatives. Their other child was an 11-year-old boy with jaundice, with a total and direct bilirubin of 26 mg/dL and 0.56 mg/dL, respectively. The woman was normal with no history of CNS in her family and relatives.

2.2. Molecular Genetic Analysis

2.2.1. DNA Extraction and Nucleotide-Sequence Analysis

Following the approval of the local ethics committee of Ahvaz Jundishapur University of Medical Sciences (AJUMS) and taking a written informed consent from parents, peripheral blood samples were obtained. Genomic DNA was isolated from peripheral blood of the patients, their parents, and several normal individuals using a routine phenol-chloroform method. All five coding exons and the flanking intronic regions of the bilirubin-UGT were amplified by polymerase chain reaction (PCR), according to Bosma et al., method [10–12]. Then, all PCR products were sequenced using designed primers (Primer 3.0 web based software, University of Massachusetts Medical School, USA) (Table 1).

Table 1: UGT1A1 gene primers used in PCR and sequencing.

Region
Primer
Primer sequence (5′→3′)

Pro
GCDH_pro_1F
GCTACTTGGAGGCTGAGGTG

GCDH_pro_1R
TGAGGCTTTTCATTGGTTCC

Pro
GCDH_pro_2F
AACTGACCAACCAGGAGTGG

GCDH_pro_2R
CTCTCAGGGCCATGCTCTCT

Exon 1
GCDH9_ex1F
GATTTCCACAGGCAAGGCTA

GCDH_ex1R
CTCCTTCCCTCCACACTCC

Exon 2
GCDH_ex2F
GGAACCAATGAAAAGCCTCA

GCDH_ex2R
GCGACCAGAGGTCCTTACAC

Exon 3
GCDH_ex3F
TCGCTCTGAGAGAGCATGG

GCDH_ex3R
CTGCCTTAGTGCCTCTGACC

Exon 4
GCDH_ex4F
CAGGGTCAGAGGCACTAAGG

GCDH_ex4R
GAAAAACTGCAAAGGGACCA

Exon 5
GCDH_ex5F
AGATCCTCATCAGGGACACCT

GCDH_ex5R
CCAGCTACTAGAGGGGTGGAG

Exon 6
GCDH_ex6F
GCCACAATTTCCCAGTCTGT

GCDH_ex6R
CAGAATAGGCTCAGGGGACA

Exon 7
GCDH_ex7F
CATATTGGTCAGGCTGGATTTT

GCDH_ex7R
CACTACAAACAGATCGGCCATA

Exon 8
GCDH_ex8F
TGGGACCAAGACCTGGTAAG

GCDH_ex8R
CCGGCTGAGTAAGAATCACC

Exon 9
GCDH_ex9F
TTCCCTGCTTCAGAGTTGGT

GCDH_ex9R
AGGACGTCACTGGTCATTCC

Exon 10
GCDH_ex10F
CAGTGACGTCCTTCTGAGCA

GCDH_ex10R
AGGACAAGAGGGACAGCAGA

Exon 11
GCDH_ex11F
GGACCTGAACCTTCTGCTGT

GCDH_ex11R
CTCCAGATGAGGGACAGAGG

Exon 12
GCDH_ex12_1F
TGGCCTCACAGTCTTCTCCT

GCDH_ex12_1R
CTCCCTCACTCTGCTCCAAC

Exon 12
GCDH_ex12_2F
GGATGGAGTGGGAAGTGAGA

GCDH_ex12_2R
CCAGACCACTCTAGGGGAAA

Table 2: Mutations identified in patients with Crigler-Najjar syndrome (CNS).

Patients
Reported consanguinity
Bilirubin (mg/dL)
Age/sex (F: female; M: male)
Mutation
Polymorphisms
Reference

Total
Direct

Family A

CNS-1
Yes
31.2
1.79
9-month-old/M
c.238_240del/c.238_240del
Del(AG)
Novel

CNS-2
Yes
1.53
0.97
22-year-old/M
c.238_240del/N
Del(AG)
Novel

CNS-3
Yes
2.1
1.22
21-year-old/F
c.238_240del/N
Del(AG)
Novel

Family B

CNS-4
No
—
—
18 weeks GA/—
c.238_240del/ c.238_240del
Del(AG)
Novel

CNS-5
No
3.6
1.78
28-year-old/M
c.238_240del/N
Del(AG)
Novel

CNS-6
No
1.69
1.01
26-year-old/F
c.238_240del/N
Del(AG)
Novel

CNS-7
No
26
1.5
11-year-old/F
c.238_240del/c.238_240del
Del(AG)
Novel

Family C

CNS-8
Yes
26
0.56
11-year-old/M
c.479T>A/c.479T>A
T>A
Huang et al., 2006 [2]

CNS-9
Yes
1.48
0.99
49-year-old/F
c.479T>A/N
T>A
Huang et al., 2006 [2]

CNS-10
Yes
2.61
1.13
52-year-old/M
c.479T>A/N
T>A
Huang et al., 2006 [2]

CNS-11
Yes
8.4
1.8
29-year-old/M
c.479T>A/N
T>A
Huang et al., 2006 [2]

CNS-12
Yes
0.8
0.3
28-year-old/F
N/N
T>A
Huang et al., 2006 [2]

The reaction mixture (30 μL) contains 2 μL of genomic DNA, 1 μL of each upstream and downstream primer (diluted to 10 μmol/L), 11 μL of ddH₂O, 15 μL of 2 × Taq PCR Master Mix (Qiagen Inc.) were used, as described by Wang et al., recently. In brief, PCR was implemented by denaturation at 95°C for 3 min, followed by 40 thermal cycles composed of 94°C for 30 sec, 55°C for 30 sec, and 72°C for 45 sec for each. Furthermore, the amplified products were isolated by electrophoresis on a 1% agarose gel and then purified using the QIAamp purification kit (Qiagen Inc.), and the nucleotide sequence was determined by direct sequencing using an ABI 310 automatic sequencer according to the manufacturer’s instructions (Applied Biosystem, Foster City, CA, USA).

3. Results

From family A, a 9-month-old boy with clinical CNS was homozygous for a 2-bp deletion mutation causing a change of the coding exons with a frameshift. The deletion of one adenosine (A) and one glutamine (G) between nucleotides 238 and 240 in exon 1 (Figure 1) modified the nucleotide of codons 238, 239, and 240 (Table 2). Sequencing showed the homozygous mutation, which had not been reported so far. The evaluation of parents revealed the heterozygous pattern of the same mutation in both (Figure 1 and Table 2). In family B, there were two individuals (B and C), an 11-year-old girl and 18-week old fetus. Patient B, a girl with clinical CNS, and patient C, a fetus, were homozygous for the same deletion as patient A (Figure 2). Both parents were also heterozygous for the same mutation (Figure 1 and Table 2).

Figure 1: The family pedigree and sequencing chromatograms of the UGT1A1 gene showing a homozygous two bp deletion (c.238_240delAG, exon 1) in the proband from family A and a heterozygous deletion in the father and the mother of each case; appearance of her chromatogram is comparable to that of a normal control; N, normal.

Figure 2: The family pedigree and sequencing chromatograms of the UGT1A1 gene showing a homozygous two bp deletion (c.238_240delAG, exon 1) in the proband from family B and a heterozygous deletion in the father and the mother of each case; appearance of her chromatogram is comparable to that of a normal control; N, normal.

In family C, there were two boys and their parents with clinical CNS. From these four subjects, three were heterozygous and one was homozygous for substitution mutation. Polymerase chain reaction and sequence analysis of the UGT1A1 gene revealed a T>A mutation at nucleotide 479 in exon 1 (Val160Glu) that has been reported previously (Table 2) [2].

4. Discussion

Mutations in the UGT1A1 gene were previously shown to cause CNS. Here we describe a unique etiology of CNS in three affected families, which was analyzed using direct sequencing of whole coding sequences and splice sites of the UGT1A1 gene. Overall seven heterozygous and four homozygous cases were observed. The deletion mutation in exon 1 may alter the structure of a protein called UDPGT due to the frameshift. The enzymatic activity of the resulting protein may reduce because it has amino acids that are different in addition to the premature translation at the codon of interest.

CNS is a rare entity with only few hundred cases reported since the first report in 1952 [13]. The incidence of CNS is estimated in a range of 0.6–1.0 per million live births [14]. Although the clinical characteristics of our patients were consistent with prior reported cases, the observed mutation was novel and different. Bilirubin encephalopathy due to CNS may occur without well-timed treatment [15].

Careful phenotypic analysis of patients who have disorders caused by UDPGT can be informative for identification of parent-of-origin differences in gene expression. Consistent with this, the mother and the father, who were heterozygous for the c.238_240del, had normal or slightly elevated serum bilirubin. It can be deduced, therefore, that in the case, homozygous for the novel deletion at the exon 1, was required for the expression of the jaundiced phenotype. Although over 65 different genetic mutations in the coding region of UGT1A1 gene have been described to cause CNS, [16, 17] the novel deletion reported here was found to inactivate the enzyme.

The characterization of a genetic defect which is present in the large majority of subjects with CNS makes a genetic test for this disorder feasible, if not practical. Moreover, knowing the molecular genetics of CN has clinical consequences that are not limited to the field of familial unconjugated hyperbilirubinemias. In all these instances, direct recognition of the role of CNS may help in the diagnostic and therapeutic management of the patient, by ruling out more harmful causes of hyperbilirubinemia.

In conclusion, we report a novel deletion within exon 1 of UGT1A1 gene, causing the jaundiced phenotype, thereby inactivating the enzyme. Though UGT1A1 gene is expressed specifically in the liver, we made an attempt to define the diagnosis and the molecular mechanism of UGT1A1 deficiency by a noninvasive molecular approach, not demanding a liver biopsy. This method not only is valuable in starting the clinical diagnosis and given that genetic counseling, but also could help the novel gene therapy approaches that involve the knowledge of the specific genetic lesion in a patient.

Conflict of Interests

The authors declare that there is no conflict of interests.

References

B. Lodoso Torrecilla, E. Palomo Atance, C. Camarena Grande et al., “Crigler-Najjar syndrome: diagnosis and treatment,” Anales de Pediatria, vol. 65, no. 1, pp. 73–78, 2006.

C. Huang, N. Tan, S. Yang, Y. Sung, and M. Huang, “Crigler-Najjar syndrome type 2,” Journal of the Formosan Medical Association, vol. 105, no. 11, pp. 950–953, 2006.

M. Torres and M. Bruguera, “Crigler-Najjar syndrome,” Gastroenterologia y Hepatologia, vol. 28, no. 10, Article ID 103.412, pp. 637–640, 2005.

S. Itoh, “Crigler-Najjar syndrome,” Ryoikibetsu Shokogun Shirizu, no. 33, pp. 519–521, 2001.

M. Jesic and S. Maglajlic, “The Crigler-Najjar syndrome, type I. Therapeutic dilemmas,” Srpski Arhiv za Celokupno Lekarstvo, vol. 128, no. 11-12, pp. 389–392, 2000.

A. Iolascon, A. Melon, B. Coppola, and M. C. Rosatelli, “Crigler-Najjar syndrome type II resulting from three different mutations in the bilirubin uridine 5′-diphosphate-glucuronosyltransferase (UGT1A1) gene,” Journal of Medical Genetics, vol. 37, no. 9, pp. 712–713, 2000.

M. I. Shevell, B. Bernard, and J. W. Adelson, “Crigler-Najjar syndrome type I: treatment by home phototherapy followed by orthotopic hepatic transplantation,” Journal of Pediatrics, vol. 110, no. 3, pp. 429–431, 1987.

M. I. Shevell, A. Majnemer, and D. Schiff, “Neurologic perspectives of Crigler-Najjar syndrome type I,” Journal of Child Neurology, vol. 13, no. 6, pp. 265–269, 1998.

H. Ihara, H. Nakamura, Y. Aoki, T. Aoki, and M. Yoshida, “In vitro effects of light on serum bilirubin subfractions measured by high-performance liquid chromatography: comparison with four routine methods,” Clinical Chemistry, vol. 38, no. 10, pp. 2124–2129, 1992.

P. J. Bosma, J. R. Chowdhury, T.-J. Huang et al., “Mechanisms of inherited deficiencies of multiple UDP-glucuronosyltransferase isoforms in two patients with Crigler-Najjar syndrome, type I,” The FASEB Journal, vol. 6, no. 10, pp. 2859–2863, 1992.

P. J. Bosma, N. R. Chowdhury, B. G. Goldhoorn et al., “Sequence of exons of the flanking regions of human bilirubin-UDP-glucuronosyltransferase gene complex and identification of a genetic mutation in a patient with Crigler-Najjar syndrome, type I,” Hepatology, vol. 15, no. 5, pp. 941–947, 1992.

P. J. Bosma, B. Goldhoorn, R. P. J. O. Elferink, M. Sinaasappel, B. A. Oostra, and P. L. M. Jansen, “A mutation in bilirubin uridine 5′-diphosphate-glucuronosyltransferase isoform 1 causing Crigler-Najjar syndrome type II,” Gastroenterology, vol. 105, no. 1, pp. 216–220, 1993.

E. Plöchl and W. Hohenwallner, “Treatment of Crigler-Najjar's congenital familial non-hemolytic jaundice with kernicterus,” Wiener Medizinische Wochenschrift, vol. 128, no. 3, pp. 70–73, 1978.

C. P. Strassburg, “Hyperbilirubinemia syndromes (Gilbert-Meulengracht, Crigler-Najjar, Dubin-Johnson, and Rotor syndrome),” Best Practice and Research, vol. 24, no. 5, pp. 555–571, 2010.

S. Pett and A. P. Mowat, “Crigler-Najjar syndrome types I and II. Clinical experience—King's College Hospital 1972–1978. Phenobarbitone, phototherapy and liver transplantation,” Molecular Aspects of Medicine, vol. 9, no. 5, pp. 473–482, 1987.

A. Kadakol, S. S. Ghosh, B. S. Sappal, G. Sharma, J. R. Chowdhury, and N. R. Chowdhury, “Genetic lesions of bilirubin uridine-diphosphoglucuronate glucuronosyltransferase (UGT1A1) causing Crigler-Najjar and Gilbert syndromes: correlation of genotype to phenotype,” Human Mutation, vol. 16, no. 4, pp. 297–306, 2000.

F. Rossi, M. Francese, R. M. Iodice et al., “Inherited disorders of bilirubin metabolism,” Minerva Pediatrica, vol. 57, no. 2, pp. 53–63, 2005.