Antimicrobial and Antioxidant Activities and Phytochemical Analysis of Rosmarinus officinalis L. Pod and Thymus vulgaris L. Leaf Ethanolic Extracts on Escherichia coli Urinary Isolates

The indiscriminate use of antibacterial agents has resulted in one of the largest recent global health problems, which is the emergence of bacterial resistance. This study aimed to examine the antimicrobial and antioxidant activities of ethanolic extracts of the two medicinal plants; Rosmarinus officinalis pods and Thymus vulgaris leaves on Escherichia coli urinary isolates. Both plants were extracted by absolute ethanol, and various concentrations (100, 50, 25, and 12.5 mg/ml) of the ethanolic extracts were prepared and tested against 53 urinary isolates of E. coli. An antibiotic susceptibility test was performed using chloramphenicol, gentamycin, amoxicillin, ceftriaxone, and ciprofloxacin against isolated bacteria. The antioxidant activity was measured using the DPPH method. The chemical analysis of both extracts was determined using gas chromatography-mass spectrometry (GC/MS) technique. The results showed that 88.7% of the isolated bacteria were sensitive to chloramphenicol and 87% were sensitive to gentamycin, while all isolates were resistant to amoxicillin, 13% of E. coli isolates were found to be multidrug-resistant (MDR). The inhibitory zone of R. officinalis extract against E. coli ranged between 8 and 23 mm and for T. vulgaris extract ranged between 8 and 20 mm at concentrations between 25, 50, and 100 mg/ml. The MIC of both extracts against isolates is between 12.5 and 50 mg/ml, while the MBC is between 50 and 100 mg/ml. The DPPH radical scavenging potential of T. vulgaris was 83.09%, followed by R. officinalis (81.26%). The chemical analysis by GC-MS of R. officinalis showed that the most active compounds were: eucalyptol (18.57%), bicycloheptan (10.01%), and octahydrodibenz anthracene (7.44%) and for T. vulgaris the most active compounds were: thymol (5.7%), phytol (7.92%), and hexadecanoic acid (18.51%). R. officinalis and T. vulgaris ethanolic extracts possessed antimicrobial and antioxidant activities and were found to be rich natural sources of active constituents used as traditional medicine.


Introduction
Te excessive use of antibiotics contributed to the emergence and spread of antibiotic-resistant bacteria in Sudan. Escherichia coli remain one of the most frequent causes of several common bacterial infections in humans. It is a type of Gram-negative bacterium and has been documented to be the most common pathogen associated with urinary tract infections in many countries, causing both community and hospital-acquired urinary tract infections (UTI); it is among the most common infections with an increasing resistance to antimicrobial agents [1]. For centuries, plants have been used for a wide variety of purposes, including the treatment of infectious diseases [2]. Aromatic plants and spices also have great importance for the pharmaceutical industry, cosmetics, and food. According to the World Health Organization, approximately 80% of the world's population, mostly in developing countries, still relies on medicinal plants for primary health care [3]. Many plants have been studied because of their bioactive properties and great antioxidant potential. Antioxidants reduce oxidative stress in cells and have therefore become useful in the treatment of many human diseases, including cancer, cardiovascular, and infammatory diseases [4]. Synthetic drugs are widely used against microorganisms; unfortunately, they develop resistance to many antibiotics as a result of their indiscriminate use. Furthermore, these antibiotics sometimes cause allergic reactions and immune suppression. Te use of plants is safer for human health and for the environment. Rosmarinus ofcinalis, which belongs to the Lamiaceae family, is a plant with green, picked, and fragrant leaves and pods, also rich in chemical compositions that possess antimicrobial and antioxidant properties as reported in various researches [5]. Tymus vulgaris which belongs to the Lamiaceae family too, has been widely used for its organoleptic and medicinal properties, and they possess antiinfammatory, antioxidant, antibacterial, and antifungal activities [6].

Preparation and Extraction of Plant Materials.
Te commercial plant materials were obtained from the local market in 2019 and authenticated in the Medicinal and Aromatic Plants and Traditional Medicine Research Institute. Herbal samples were purchased and washed, then air-dried at room temperature (30°C) for approximately 5 days. After that, each sample was ground to a coarse powder using a pestle and mortar and stored in a clean container, ready for extraction. About seventy grams of each plant were weighted, macerated in absolute ethanol, and left at room temperature for three days. Extracts were fltered through flter paper and vacuum concentrated at 80°C [5].

Bacteria Strain.
Te bacterial isolates were provided by a Police's Hospital, inoculated on nutrient slope and incubated aerobically at 37°C for 24 hours, preserved at 20°C and re-identifed by morphological colony identifcation and biochemical tests to confrm the E. coli organisms.

Antimicrobial Activity (Disc Difusion Method).
Twenty ml aliquots of Mueller Hinton agar were adjusted into sterile Petri dishes. Te isolates and standardized bacterial stock suspension were adjusted to 0.5 McFarland and streaked on Mueller Hinton agar medium plates using a sterile cotton swab. Sterile flter paper discs (6 mm Whatman No. 1) were soaked with diferent concentrations (12.5, 25, 50, and 100 mg/ml) of the extracts, and then placed on the surface of the agar. Te plates were incubated for 24 hours at 37°C and the diameters of the inhibition zones were measured in mm [8]. MIC was determined by the lowest concentration that inhibited the growth of E. coli [8]. Tis experimental study was conducted at the Microbiology Research Laboratory, Sudan University of Science and Technology.

Susceptibility Test of Isolates against Selected
Antimicrobial Discs. Disc difusion method was used to determine the antibiotic susceptibility of E. coli. Te isolates were suspended in sterile normal saline, and the turbidity was adjusted to a standard concentration of 0.5 McFarland solutions. Te isolates were then inoculated on Mueller Hinton agar. Te following antibiotic discs were used in this study: chloramphenicol (30 mcg), gentamicin (10 mcg), amoxicillin (25 mcg), ceftriaxone (30 mcg), and ciprofoxacin (50 mcg). All discs contained a precise concentration of the antibiotics that were individually placed 1 cm from the wall and from each other. Te plates were then incubated at 37°C for 24 hours. Te diameter zones of inhibition were measured in millimeters and interpreted according to the Clinical Laboratory Standard Institute (CLSI) protocol [9].

Broth Dilution Technique for Detection of MIC and MBC.
Te minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of both extracts were determined using standard procedures. 100 mg of each extract was dissolved in 1 ml of dimethyl sulfoxide (DMSO). Serial dilutions at concentrations of 50, 25, and 12.5 were prepared. Bacterial concentration was calibrated to a McFarland standard of 0.5. Te bacteria were added to the diluted extract. Te turbidity of the solution in each tube was observed after 24 hours in order to fnd out if there was any bacterial growth. Te tubes that showed no turbidity were recorded as MIC values. Te MBC value was considered as the lowest concentration of the extract dilution showing no visible growth [10].

Determination of Antioxidant Activity by DPPH Method.
Te DPPH radical scavenging was determined according to the method of Hilmi et al. [11] with some modifcations. In a 96-well plate, the test samples were allowed to react with 2.2 Di (4-tetra-octylphenyl)-1-picryl-hydrazyl (DPPH) for half an hour at 37°C. Te tested samples were dissolved in DMSO while DPPH was prepared in ethanol. After incubation, absorbance was measured at 517 nm using multiple reader spectrophotometers. Te percentage of radical scavenging activity was determined. Ascorbic acid was used as a standard and all tests and analyses were run in triplicates [12].

Gas Chromatography-Mass Spectrometry.
Te qualitative and quantitative analyses of the samples were carried out by using GC-MS technique model (GC-MS-QP2010-Ultra) from Japan Shimadzu Company, with a capillary column (Rtx-5 ms-30 m × 0.25 mm × 0.25 μm). Each sample was injected by using the split mode, with helium as the carrier gas passed with a fow rate of 1.61 ml/min. Te temperature program was started from 60°C with a rate of 10°C/min to 300°C as the fnal temperature degree. Each sample was analysed by using scan mode in the range of m/z 40-500 charges to ratio, and the total run time was 26 min. Identifcation of components for the samples was achieved by comparing their retention times and mass fragmentation patterns with those available in the library from the National Institute of Standards and Technology (NIST).

Data
Analysis. Te data were analysed by using Statistical Package for Social Sciences (SPSS v.20) program to get the mean and the standard deviation.
Te antibacterial activity at concentrations of 12.5, 25, 50, and 100 mg/ml of the ethanolic extracts of R. ofcinalis pod and T. vulgaris leaves were determined against 53 urinary isolates of E. coli using the disc difusion method. Both extracts showed variable activity against the tested bacteria. Te inhibition zone of R. ofcinalis against E. coli ranged between 8 and 23 mm and for T. vulgaris between 8 and 20 mm, as shown in Tables 2 and 3. Te MIC of both extracts against multidrug-resistant E. coli isolates ranged between 12.5 and 50 mg/ml, while the MBC ranged between 50 and 100 mg/ml, as shown in Table 4.

Antioxidant Activity.
Te highest DPPH radical scavenging potential showed in T. vulgaris, it was found to be 83.09%, followed by R. ofcinalis (81.26%), as shown in Table 5.

Discussion
Medicinal plants contain components that have diferent therapeutic potential; they have been utilized as treatments for human infections for centuries [25]. Urinary tract infections (UTIs) are the second most prevalent cause for hospital visits and one of the most common causes of morbidity in the general population [26]. Antibiotic resistance against bacterial pathogens associated with urinary tract infections (UTI) is rapidly increasing worldwide [27]. E. coli is one of the most common causes of urinary tract infections [28]. In this study; 7 (13%) E. coli urinary isolates showed multidrug resistance which is in an agreement with Saeed et al. [29] who found that E. coli urinary isolate in Sudan was highly resistant to the most utilized antibiotics, it showed highly resistant rates against ampicillin, amikacin, amoxycillin, nitrofurantoin, co-trimoxazole, tetracycline, and cephalosporins that have continued to increase in the past decade and now approaches 40%, also E. coli showed high susceptible rates to gentamicin.
R. ofcinalis extract at a concentration 100 mg/ml showed an inhibition zone of 12 mm against E. coli, which disagreed with a study done by Jifri and Zahira [27] in Iran, who reported that a zone of inhibition of leaf extract was found to be 10.5 mm at a concentration of 500 mg/ml. Te diferences in results may be due to the diference in bacterial cell wall, origin of the R. ofcinalis, or the diference in part used.
Antimicrobial activity with the MIC of R. ofcinalis ethanolic extract against E. coli was examined using the concentrations 100, 50, 25, and 12.5 mg/ml. Te MIC for one isolate was 12.5 mg/dl, and other isolates ranged from 25 mg/ dl and above; the results were mismatched with Genena et al. [30] in Brazil, who reported that a higher concentration of the extract needed to inhibit E. coli was 320 mg/ml, also disagreed with Golshani and Shaifzadeh [5]. Another study in Iran, reported that the MIC of the R. ofcinalis L. extract that inhibits E. coli growth was 200 mg/ml. Te diferences may be due to cell membrane permeability or due to other genetic factors.
T. vulgaris extract showed a zone of inhibition of 11 mm against E. coli at 100 mg/ml. Tese fndings were difered from those obtained by Mohsenipour and Hassanshahian  [31] who reported that the ethanolic extract of T. vulgaris was not efective against E. coli; discrepancy may be due to the resistance of E. coli strains.
MIC of T. vulgaris ethanolic extract against E. coli was examined using the concentrations 100, 50, 25, and 12.5 mg/ ml. It was found that MIC ranged from 12.5 mg/dl and above. Tese results were conficted with Jifri and Zahira [27] in Iran, who reported that a higher concentration of the extract needed to inhibit E. coli was 500 mg/ml. Also varied from Bayoub et al. [19] in Morocco who found MIC of the T. vulgaris extract that inhibit E. coli growth was 1.56 mg/ml. Te diferences might be due to use of other method or resistance of E. coli due to cell membrane permeability, or other genetic factors.
Te present result showed the DPPH radical scavenging activity of R. ofcinalis L. was 81.26% and it was comparable with the fndings of Martínez et al. [32] in Spain whom reported that rosemary exhibited a high radical scavenging activity, also, another study by Kumuda et al. [12] in India who found the DPPH radical scavenging activity of R. ofcinalis L. was 77.37%.
Te present result showed the DPPH radical scavenging activity of T. vulgaris L. was 94.51% and it was similar with the fndings of Wisam et al. [33] in Pakistan,who reported that thyme exhibited a high radical scavenging activity, and Iuliana et al. [34] in Romania who found that T. vulgaris L. presents signifcant antioxidant activity.
In this study, the analysis of R. ofcinalis L. extract by GC-MS led to the identifcation of 77 compounds by comparison of recorded mass spectra with those of a computer library but the most active compounds were eucalyptol, camphor, endo-borneol, beta-Amyrin, wogonin, beta-Amyrone, and octahydrodibenz [a, h] anthracene. Eucalyptol was obtained at the highest percentage was considered as antimicrobial agent and camphor which was found in the extract has a great antioxidant and antimicrobial activity. Tese results were matched with Rashid et al. [8] in Baghdad who found that rosemary extracts contain endo-borneol, camphor, and eucalyptol but at diferent concentrations, this variation may be due to seasonal variation, plant status, and the extraction method.      Antibacterial activity [16] Flavone, 5,7-dihydroxy-8-methoxy

5.25
Antimicrobial activity [18] International Journal of Microbiology Te analysis of T. vulgaris extract by GC-MS led to the identifcation of 24 compounds by comparison of recorded mass spectra with those of a computer library but the most active compounds were thymol, phytol, hexadecanoic acidethyl ester, stigmasterol, linolelaidic acid ethyl ester, octadecatrienoate, and gamma sitosterol. Hexadecanoic acid, ethyl ester was obtained at the highest percentage was considered as antioxidant. Hexadecanoic acid and thymol, which were found in the extract, possess antimicrobial activity. Tese results were agreed with Iuliana et al. [34] in Romania who found T. vulgaris extract contains thymol, camphor, palmitic, stearic, oleic, and linoleic and linolenic acids but at diferent concentrations. Te diferences may be due to seasonal variation, plant condition, or the extraction methods.

Conclusion
Screening of R. ofcinalis and T. vulgaris against E. coli as well as the radical scavenging potential showed that the ethanolic extracts of the two plants have broad antimicrobial and antioxidant activities. Both extracts have antibacterial activity which might justify the use of those herbs in the pharmaceutical industries for the production of new semi-synthetic agents against E. coli. Chemical analysis showed that some compounds detected from the two plants were found to be antimicrobial agents. Tis study demonstrated support for the claimed uses of the plants in the traditional medicine. Te results of the present study gave solid grounds that both plants extracts possess a medicinal potential to develop new phytopharmaceutical drugs, further research studies are warranted to isolate the active components.

Data Availability
Te data used to support the fndings of this study are available from the corresponding author upon reasonable request.

Disclosure
An earlier version of this manuscript has been presented as a Dissertation in Sudan University of Science and

Conflicts of Interest
Te authors declare that they have no conficts of interest.