Synchrotron FTIR Light Reveals Signal Changes of Biofunctionalized Magnetic Nanoparticle Attachment on Salmonella sp

Bioscience Program, Department of Microbiology, King Mongkut’s University of Technology Thonburi (KMUTT), Bangkok 10140, Thailand Synchrotron Light Research Institute (Public Organization), Muang District, Nakhonratchasima 30000, Thailand Maintenance Technology Center, Institute for Scientific and Technological Research and Services (ISTRS), KMUTT, Bangkok 10140, Thailand Chemical Engineering, Kansas State University, Manhattan, KS 66506, USA Food Safety Center, ISTRS, KMUTT, Bangkok, Thailand Department of Microbiology, Faculty of Science, Kasetsart University, Bangkok 10900, Thailand


Introduction
Foodborne diseases are important public health problems worldwide. Salmonella is one of the four key pathogenic bacteria that are the main causes of diarrheal diseases throughout the world [1]. The US Centers for Disease Control and Prevention (CDC) estimates 1.2 million cases of foodborne illnesses, 23,000 hospitalizations, and 450 deaths every year in the United States due to infection with Salmonella [2]. In Europe, as reported by the European Food Safety Authority (EFSA) and European Centre for Disease Prevention and Control (ECDC) in 2017 [3], Salmonella was the commonest detected cause of reported outbreaks of foodborne infection and caused 91,662 illnesses in the European Union. The published data suggested that egg, meat, and meat products were the highest risk agents/food pairs [3]. In Thailand, the Bureau of Epidemiology, Department of Disease Control, Ministry of Public Health, reported 115,095 cases of foodborne illnesses in 2018, and Salmonella is one of the top three agents in food contaminated by pathogenic microorganisms [4]. Salmonella is a gram-negative and rod-shaped bacillus, which belongs to the family Enterobacteriaceae [5,6]. More than 2,500 serotypes of Salmonella have been reported [7,8]. Of these, Salmonella enterica serovar Typhimurium (S. Typhimurium) and S. enterica serovar Enteritidis (S. Enteritidis) are the most common serotypes associated with human illness, and detection of Salmonella in food products is very important for the effective prevention of severe health problems.
Standard methods currently used for Salmonella detection in food samples such as ISO 6579:2002 and US FDA-BAM methods have several steps including selective/nonselective enrichments to increase the number of the target microorganism, selective plating for isolation, and biochemical and serological tests for confirmation. These methods are laborious and time-consuming and require 4 to 7 days to complete [7,8].
Culture-independent methods could dramatically overcome the time-consuming culturing steps. Nondestructive and noncontact rapid detection is essential to ease detection and avoid contamination in laboratories. It also allows high-throughput testing and increases sample size (n). Recently, nanoparticles have been used for various applications including protein immobilization, bioseparation, environmental treatment, biomedical and bioengineering usage, and food analysis [9]. Among all types of nanoparticles, magnetic nanoparticles (MNPs), especially magnetite (Fe 3 O 4 ) and maghemite (γ-Fe 2 O 3 ) nanoparticles, are of interest in various chemical and biological applications such as catalysis, magnetic hyperthermia, magnetic resonance imaging (MRI), bioseparation, diagnostic agents, biomolecule immobilization, drug delivery, and bacteria detection [9][10][11]. Magnetite (Fe3O4) and maghemite (γ-Fe 2 O 3 ) nanoparticles are useful because of their unique properties such as superparamagnetism, high surface areas, large surface-to-volume ratio, low toxicity, and ease of separation under external magnetic fields [9,12]. Several methodologies were reported using magnetic nanoparticles in combination with other materials or other methods such as with silica nanoparticles, polymerase chain reaction (PCR), or cultural isolation methods [11,[13][14][15].
Different types of nanoparticles (NPs) including, silica, gold, silver, and magnetic NPs have been used for direct bacteria detection and screening. Detection techniques that use NPs for the capture of foodborne pathogens are rapid, sensitive, and specific [16].
The binding affinity between the target pathogen and NPs in detection methods depends on the immobilization of the NPs with the specific recognition elements such as antibodies, biological molecules, and aptamer. The specific bioconjugation with target microbes improves the NP adsorption to pathogens [17].
Gold nanoparticles (AuNPs) offer unique optical properties that could provide color-changing property under aggregation-induced interparticle surface plasmon resonance or electron oscillation with light. The assay has a visible color change from red to blue (violet) that can be seen by the naked eye. AuNP binding to E. coli O157:H7 gives a color change from red to blue in a sample solution due to E. coli O157:H7 bindings and the specific antibody [18].
Fourier-transform infrared (FTIR) spectroscopy is a powerful rapid nondestructive analytical technique [19] that is sensitive and versatile [20]. This technique is a measurement of the vibration properties of chemical bonds when excited by the absorption of IR radiation in a sample [21]. Biological applications include detection, discrimination, classification of bacteria [22], protein structural studies [23], diagnosis of breast cancer [24], and investigation of biological tissues [25]. This method could be used as a test method, but the cost of the machine was high. Alternatively, the FTIR method was used to identify unique peaks for future machine design and other culture-independent applications.
The detection and identification of pathogenic organisms by spectroscopic techniques give a great benefit and value to the quantitative and qualitative information of the target pathogens. It is a promising method because of their sensitivity, rapidity, and low expenses and simplicity [26]. In this case, the unique peaks for all bacteria tested (Bacillus megaterium, Escherichia coli, and Pseudomonas stutzeri) that were missing in fungi were the peak at wave number 1396. On the other hand, fungi (Penicillium sp., Memnoniella sp., and Fusarium sp.) had a unique peak at wave number 1377 that was absent in all bacteria tested. The technique was suggested to be used for rapid discrimination between bacterial and fungal infections and contaminations.
FTIR techniques could be used to identify and classify bacterial strains through the use of the spectral library for each type of bacteria [27]. Further applications of FTIR spectroscopy as a bacterial source tracking tool are to discriminate fecal Escherichia coli strains from cows, chickens, and humans. The application of specific peaks unique to different strains or species of bacteria is promising and worth further investigation [21]. FTIR spectra in the region between 2861 and 3026 cm -1 were suggested as suitable unique peaks for fecal E. coli discrimination. They were peaks at wave numbers 2852 of C-H stretching of CH 2 in fatty acid, 2924 and 2946 for C-H stretching of CH 2 , and 2960 for C-H stretching of CH 3 in fatty acids. The identification of structural changes in molecular binding between microorganisms and metal atoms of nanoparticles was reported by [28]. FTIR spectra changes in the fatty acids, specifically -CH deformation, to alter bacterial membrane permeability, due to the interaction of cells to AgNPs were reported.
The infrared spectrum of compounds and their interactions also give a unique fingerprint for microbial identification [29]. FTIR spectroscopy could be used as a unified method for the analysis of many cellular metabolites for the screening of microbial bioprocesses [30]. The tracking of pharmacological substances is also reported [31]. The observation indicates the versatility of FTIR tracking in dynamic and sequential reactions such as the attachment of pathogens to target cells or supporting materials [28].
Synchrotron radiation-based FTIR (SR-FTIR) spectroscopy has an advantage for these experiments due to its higher signal-to-noise ratio (by 100-to 1000-fold), higher collimation, and luminance, which can reach diffraction limit with 10 μm or better compared with conventional FTIR with about 75 μm spatial resolution [32].

2
Journal of Nanomaterials The objective of this research was to develop new technology by employing the Synchrotron FTIR light to track signal changes of attachment/reaction steps of the particles, crosslinker, antibody, and Salmonella cells. This was to identify unique peaks of each reaction step that enable further development of effective rapid, noncontact, and cultureindependent detection platforms for Salmonella in foods and other applications for food and environmental and medical diagnosis in the future.

Materials and Methods
2.1. Preparation of Magnetic Nanoparticles. Preparation of magnetic nanoparticles (amino-FNPs) using the polyol technique with ethylenediamine as the amino group source was described by Songvorawit et al. [11]. Briefly, 2 g of ferric chloride (FeCl 3 ·6H 2 O) was dissolved in 40 ml ethylene glycol and mixed until the solution was clearly yellow. Then, 6 g of sodium acetate (CH 3 COONa), 1.68 g of sodium hydroxide (NaOH), and 20 ml of ethylenediamine were added and stirred for 30 min. After mixing, the solution was further heated in an autoclave at 121°C, 105 kPa, and 2 h per cycle for 3 cycles. After each cycle, the mixed solution was shaken for 5 min to complete the reaction. After completion, the aminofunctionalized ferromagnetic nanoparticles (amino-FMNs) were separated by magnet and washed five times with deionized water and five times with 95% ethanol to remove the solvent. Ultrasonication was used while washing to remove the solvent from the particle surface. The MNPs were dried in an oven at 50°C for 24 h, milled with mortar, and kept in airtight amber bottles until use.

Surface Modification of Magnetic Nanoparticle with
Glutaraldehyde. Glutaraldehyde (GA) was used as the crosslinker to connect antibodies to the nanoparticle surface. The aldehyde group reacts with amino-FMN, while the aldehyde group on the other end could link to amine groups of the antibodies [33]. The reaction was used to improve the immobilization capacity of antibodies [34]. For the reaction, firstly, 0.1 g of MNPs was washed and resuspended in 50 ml of phosphate-buffered saline (PBS) pH 7.4 at a concentration of 2 mg/ml. Then, 5 ml of glutaraldehyde (25% v/v) was added and stirred at room temperature for 2 h. The modified MNPs were separated by an external magnetic field and washed three times with PBS (pH 7.4) to remove free glutaraldehyde. It was resuspended in PBS before being used in the next step [11].
Glutaraldehyde-modified FMNs were conjugated with the polyclonal antibody against Salmonella Typhimurium (S&A Reagents Lab, Bangkok, Thailand) and incubated at 25°C overnight with gentle shaking. Then, the particles were washed three times with 1x PBS (pH 7.4) to remove free che-micals and antibodies. They were stored in an air-tight amber bottle at 4°C until use.

Attachment of Antibody-Conjugated Magnetic
Nanoparticles to Salmonella Cells. The antibody-conjugated magnetic nanoparticles were reacted with Salmonella Typhimurium cells by mixing 500 μl of cell suspension with 8 μl of the magnetic nanoparticles and incubating at 37°C for 30 min in a shaker incubator. After that, the particle-bacterial complexes were separated from the suspension by a magnet. At each preparation step, samples were washed three times with PBS (pH 7) buffer to wash away free glutaraldehyde and antibodies. The particles and cells, after attachment steps, were analyzed with Synchrotron radiation-based Fourier-transform infrared (SR-FTIR) spectroscopy and field emission scanning electron microscopy (FESEM) techniques. The unique peaks of each step were identified. The particle-bacterial complexes were determined for capture efficiency of Ab-conjugated FMNs by plating for enumeration on xylose lysine desoxycholate agar (XLD) and incubated at 37°C for 48 h.

Synchrotron FTIR (SR-FTIR) Spectroscopy Detection of
Signal Changes. SR-FTIR signal changes of reaction steps of amino-FMNs, glutaraldehyde (GA), Salmonella cells, antibody alone, and their attachment steps were monitored in duplicate. Five (5) μl of each sample was dropped onto barium fluoride windows, spread very thinly from the droplet in a linear fashion on the slide surface using pasture pipette, and then vacuum-dried for 30 min in a desiccator. Four (4) spots per window were prepared for the signal change tracking.
FTIR experiments were conducted at the IR station of the Synchrotron Light Research Institute (Public Organization), Thailand. Samples were analyzed in the transflection mode, using the conventional internal IR source of a Bruker Vertex 70 spectrometer connected to the Bruker Hyperion 2000 microscope (Bruker Optics Inc., Ettlingen, Germany). The microscope with a 36x objective/condenser was equipped with a nitrogen-cooled MCT (HgCdTe) detector (area 250 × 250 μm 2 ). For each measurement, IR signals were acquired from 20 × 20 μm 2 aperture size, mapped within most homogeneous zones. Sixty-four scans (20 kHz velocity and 4 cm -1 spectral resolution) were performed within the 4000-800 cm -1 spectral interval to obtain the average spectra with an appropriate signal-to-noise ratio. This would provide sufficient repeatable information for each spectrum.
Since there were a number of cells analyzed from one set of measurements within the aperture area, several locations were selected for the spectra of each interested cell. Then, from the reproducible spectra measured from several cells, the OPUS 6.5 software (Bruker) was implemented to combine all spectra readily for further comparison with other sets of measurements or experiments.
2.6. Bacteria Imaging under FESEM Microscopy. Field emission scanning electron microscopy (FESEM) that used electron, liberated by a field emission source, in place of light in a zig-zag pattern, was used to scan Salmonella cells with and without FMN attachments. For sample preparation, the bacteria were washed three times in phosphate-buffered saline (PBS, pH 7.2) for 15 min each and left in 2.5% glutaraldehyde and PBS for 12 h. Samples were washed three times with PBS, then exposed in a series (25%, 50%, 75%, 90%, and 100%) of ethanol solutions for 20 min each to dehydrate cells. Finally, the samples were critical point-dehydrated (CHRIST Beta2-8 LCS plus 102125, Germany) using carbon dioxide as the transition fluid and coated with gold and palladium sputtering (Quorum, SC7620, UK). High-magnification imaging of the FMNs attached with Salmonella cells was performed at an operating voltage of 5 kV under the FESEM (TESCAN, MIRA 3, Czech Republic).

Tracking of Signal Changes of Magnetic Nanoparticles
Attached to Salmonella Cells. This technology development is aimed at tracking signal changes of the attachment steps of FMN particles to the GA crosslink, antibodies, and Salmonella for further development methods for the rapid detection of Salmonella spp. In this study, the amino-FMN particle surface was modified with glutaraldehyde crosslink. Antibodies against Salmonella spp. were attached to glutaraldehyde that enables the nanoparticles to attach onto Salmonella cells. Signal changes at each stage were tracked with SR-FTIR spectroscopy as illustrated in Figure 1.
3.2. SR-FTIR Spectra of Amino-FMNs, Glutaraldehyde, Salmonella Cells, and Antibody 3.2.1. Amino-FMNs. The amino-FMNs were black in color and could be attracted by an external magnetic force (Figure 2(a)). The size and morphology of FMNs were investigated by FE-SEM (Figure 2(b)). The cubic nanoparticles had uniform particle size. The average diameter of the nanoparticles determined by FE-SEM was approximately 50 nm.
SR-FTIR spectra of individual GA, Salmonella cell, amino-FMNs, and antibody against Salmonella cells are displayed in Figure 3. The peak at 1673 cm -1 corresponded well with N-H scissoring vibration of NH 2 in aliphatic primary amine [28]. It is a characteristic of a single amino-FMN particle. Results indicated the existence of an amino group on the particle surface.
3.2.2. Glutaraldehyde (GA). The absorption characteristics of glutaraldehyde alone showed carbonyl groups of aldehyde (-CHO) absorption at 1722 cm -1 and C-H stretching of aldehyde (-CHO) absorption at wave number 2872. They were the FTIR spectrum characteristic of glutaraldehyde. The presence and absence of these peaks were used to indicate an interaction with FMNs and antibodies. Figure 4(c) and Table 1 showed the FTIR spectrum of antibody against Salmonella that demonstrated a characteristic of serum antibodies in the protein region with main peaks at 1656 cm -1 (C=O stretching vibration of amide I band) and 1545 cm -1 (C-N stretching and N-H bending vibration of amide II band).

Salmonella Cells.
Synchrotron FTIR spectra of Salmonella cells alone are shown in Figure 3. FTIR spectroscopy could identify variations in the total composition of bacterial cells, including protein, fatty acids, nucleic acid, and carbohydrate, due to functional group vibrations in the main biomolecular constituents [19]. The main region to analyze components of intact bacterial cells followed that indicated by Naumann [35]. The region between 3000 and 2800 cm -1 was fatty acid and lipid regions. Peaks between 1800 and 1500 cm -1 were amide I and amide II of proteins and peptides, the region from 1500 to 1200 cm -1 was a phospholipid/DNA/RNA region, and the region in 1200-900 cm -1 was for carbohydrate. Moreover, the region from 900 to 600 was ascribed as a fingerprint region [35]. Figure 3(d) showed bands at 2876 cm -1 of -CH symmetric stretching of CH 2 in fatty acids, respectively [19,35]. The peak at 3287 cm -1 indicates N-H stretching of amide A and amide B, respectively, in protein [16]. Besides, the majority of responsible peaks for the protein region were observed at 1654 and 1544 cm -1 , which are dominated by the amide I and amide II of proteins and peptide. The regions between the 1500 and 1200 cm -1 area were the fatty acid region. The observed peaks around 1451, 1406, and 1238 cm -1 were CH 2 scissoring vibration [36], C=O symmetric stretching of COOgroup, and P=O asymmetric stretching of phosphodiester in phospholipids, respectively [19]. The band at 1086 cm -1 was dominated by C-O-C and C-O ring vibration in various polysaccharides. In the region between wave number 900 and 600 cm -1 is the fingerprint region that corresponds to nucleic acids, i.e., phenylalanine, tyrosine, tryptophan, and various nucleotides [35].

SR-FTIR Spectra of FMNs-Glutaraldehyde-(GA-)
Antibodies-(Ab-) Salmonella Complex. Figure 4 shows the SR-FTIR spectra of the 4 reaction steps of FMN attachment to GA, antibody, and Salmonella cells. In Figure 4(a), SR-FTIR spectra of the FMNs-GA-Ab complex displayed a sharp absorbance at 1652 cm -1 ascribing to C=O stretching, which is a characteristic of amide I band, and the peak around 1547 cm -1 , a characteristic of amide II band with C-N stretching and N-H bending [37,38]. Both peaks indicated the attachment of antibodies to the particle surface (NH 2 -FMN). Results indicated the successful attachment of glutaraldehyde to add amine groups onto the surface of FMNs and, on another end, to the amine of antibody conjugation to form amide bonding (-CONH-) [33].
FTIR spectroscopy of the interaction of the nanoparticle complex to Salmonella cells is shown in Figure 4(b). The spectra incorporated not only the protein peaks at 1649 and 1542 cm -1 , assigned to amide I of α-helical structures of proteins and amide II band of proteins [19], but also the presence of peaks due to carbohydrates, lipid, and glycoprotein at peaks between 1454 cm -1 of CH 2 bending lipids [22,36] and 1414 cm -1 due to C=O symmetric stretching of the COOgroup in amino acids and fatty acids [19].

Discussion
The hypothesis of this research was to identify the unique peaks of each reaction steps of FMN nanoparticle and Salmonella cells. The characteristics of MNPs were reported elsewhere by our laboratory [11]. The cubic MNPs were ferromagnetism and very close to complete superparamagnetism with a saturation magnetization (Ms) of about 48 emu/g, remanence (Mr) of 1.7 emu/g, and coercivity (Hc) of 23.5 Oe. The MNPs were well dispersed in water and could be separated from the solution by the attraction of a magnet. Amino-functionalized ferromagnetic nanoparticle surface modification was made to allow further attachment of specific antibodies. The surfaces of magnetic nanoparticles were modified with glutaraldehyde crosslink. Antibodies against Salmonella spp. were attached to the aldehyde group of the other end of glutaraldehyde. The antibodies allowed the nanoparticle complexes to attach onto Salmonella cells. In this study, each stage was tracked with SR-FTIR spectroscopy. The spectra of each stage are shown in Figure 4. FTIR spectroscopy is a method based on the measurement of vibration of a molecule excited by IR radiation at a specific wavelength range [19,21]. The mid-IR (400-4000 cm -1 ) is the most commonly used region for analysis as all molecules possess characteristic absorbance frequencies and primary molecular vibrations in this range [19]. This method is a sensitive, quick, and noninvasive technique [32]. Synchrotron radiation FTIR (SR-FTIR) spectroscopy was used in this study because of its high signal-to-noise ratio (by 100-to 1000-fold), high collimation, and luminance, which can reach the diffraction limit with 10 μm or better compared with conventional FTIR spectroscopy. With this capacity, it could probe the heterogeneities in the bacteria at a single cell level [32].
Characterization of unique peaks for control and test peaks.
The SR-FTIR spectra were obtained from materials and their 4 reaction stages as follows: Stage I: controls: amino-functionalized FMN, glutaraldehyde, antibodies, and Salmonella cells alone  Step 1 : FMNs Step 2 : FMNs-glutaraldehyde Step 3 : FMNs-glutaraldehyde-antibodies Salmonella Typhimurium Step 4 : FMNs-glutaraldehydeantibodies-Salmonella cell N-CH(CH 2 ) 3 -CHO Figure 1: Schematic diagram of the designed experiment to assess with FTIR spectra of each reaction step.  Journal of Nanomaterials of magnetic nanoparticles (amino-functionalized FMN) employed the polyol technique using ethylenediamine as an amino group source (-NH 2 ). The chemical formula of ethylenediamine is NH 2 CH 2 CH 2 NH 2 , and there was the functional group including amino (-NH 2 ) and CH 2 groups. The main SR-FTIR peaks obtained from amino-functionalized FMN can be assigned as follows: 3293 cm -1 (O-H stretching), 2881 cm -1 (C-H asymmetric stretching of CH 2 in aliphatic compounds), 2810 cm -1 (C-H symmetric stretching of CH 2 in aliphatic compounds) [39,40], 1673 cm -1 (N-H bending (scissoring) vibration of NH 2 in aliphatic primary amines) [37,40], 1090 cm -1 (C-N stretching), 983 cm -1 (C-H out of plane bending of CH 2 ), and 858 cm -1 (N-H out of plane bending of NH 2 ) [37,40] (Table 1; Figures 3 and 4). However, the vibrational modes ascribed to the amino group appeared especially the band at 1673 cm -1 and 858 cm -1 , while the characteristic absorption of CH 2 was observed at 2881 cm -1 and 983 cm 1 , respectively. Furthermore, the C-N stretching appeared at 1090 cm -1 , which is the core of the chemical structure of ethylenediamine. As discussed above, it clearly indicated the presence of ethylenediamine on the surface of nanoparticles. The characteristic peak on the spectrum of amino-functionalized FMNs appeared at 1673 cm -1 from N-H scissoring of NH 2 , which is a unique peak for control of stage I. Glutaraldehyde exhibited unique peaks at wave num-bers 1722 and 1460 of C=O stretching in aldehyde groups (Table 1). FMNs = ferromagnetic nanoparticles; GA = glutaraldehyde; Ab = antibodies against Salmonella.
Antibodies against the Salmonella spectrum had unique peaks at wave numbers 1655 (C=O stretching vibration of amide I band) and 1544 (N-H bending of amide II). The Salmonella cell had a spectrum with unique peaks at wave numbers 1654 C=O vibration stretching of amide I, 1544 C-N stretching and NH bending vibration of amide II, and 1542 CH 2 scissoring vibration.

Stage II: FMN with Surface Modification and GA
Crosslinking. In this experiment, the glutaraldehyde is used as the crosslinker to bind its own aldehyde group to the amine group of FMNs. It was expected that the CHO group of the other end of GA could also bind to the amine group of antibodies against Salmonella cells [41]. GA is an organic compound that contains a linear set of 5 carbons and dialdehyde groups (-CHO) on both ends. Its chemical formula was C 5 H 8 O 2 or OHC (CH 2 ) 3 CHO or HCO(CH 2 ) 3 CHO [42]. The functional group of glutaraldehyde contains the aldehyde group (-CHO) and the alkyl group (CH 2 ) [43].  Figure 3: Synchrotron FTIR spectra of amino-functionalized magnetic particle FMNs (a) glutaraldehyde (b), antibody against Salmonella (c), and Salmonella cell with a unique peak at wave number 1451 (d). 6 Journal of Nanomaterials     [44], 2858 cm -1 (C-H asymmetric and symmetric stretching of CH 2 in aliphatic compounds) [39], 1778 cm -1 (C=O stretching in aldehydes) [39,45], 1654 cm -1 (C=N stretching) [31], 1366 cm -1 (aldehydic C-H bending vibration) [40], 1077 cm -1 (C-N stretching), and 860 (N-H of NH 2 out of plane bending) [45]. The characteristic peaks were at 1778 and 1366 cm -1 .
In this case, the peak at about 1654 cm -1 was the imine bond (C=N), which could be ascribed as the product of an interaction between the aldehyde group (-CHO) of the glutaraldehyde and the amino group [39,43]. The reaction could lead to the formation of an amide bond as follows [46]: Moreover, the peaks at 2858 cm -1 refer to C-H symmetric stretching of CH 2 in the aliphatic compound and 1366 cm -1 as aldehydic C-H bending vibration. Results indicated that surface modification of FMNs with glutaraldehyde was successful. The peak around 1366 cm -1 was a unique peak of step 2, which is a characteristic of aldehydic C-H bending vibration. The presence of the peak at wave number 1778 (C=O) after the attachment indicated the ability to link the FMNs-GA to the target antibody in the next step.  [41,47]. The main peaks from FTIR spectra of FMNs-GA-Ab can be assigned as follows: 3286 cm -1 (N-H stretching of amide A), 2919 cm -1 (C-H asymmetric and symmetric stretching vibration), 2851 cm -1 (C-H asymmetric and symmetric stretching vibration) [39], 1652 cm -1 (C=O stretching vibration of amide I), 1547 cm -1 (N-H bending and C-N stretching vibration of amide II) [38], 1465 cm -1 (C-H deformation of CH 3 ), 1396 cm -1 (C=O stretching of COO -) [39,48], 1244 cm -1 (C-H stretching and N-H in plane bending vibration of amide III) [48], 1213 cm -1 (C-C-N bending in amine), and 1017 cm -1 (carbon ring in cyclic compound) breathing [39]. Particularly, peaks at 1652 cm -1 , 1547 cm -1, and 1244 cm -1 indicate the successful attachment of glutaraldehyde with amine groups onto the surface of FMNs and amine of antibody conjugation forming amide bonding (CO-NH). The peak at 1244 cm -1 was characterized as a unique peak for control of Stage III. At this step, the aldehyde group at wave number 1778 reacted with the target antibody and, therefore, was not detected at this stage (Table 1)  Journal of Nanomaterials crosslink bearing another aldehyde end to link to specific antibodies against Salmonella spp. SR-FTIR spectroscopy provided signal changes during reaction stages on the surface of magnetic nanoparticles attached onto the Salmonella cell surface. In this experiment, the spectra of Salmonella cells were used as the reference. Figure 4 showed unique peaks for the nanoparticles with and without Salmonella at 1454, and 1414 cm -1 , which is the mixed region of fatty acid bending vibration, proteins, and phosphate-carrying compounds [16]. Moreover, the peak observed around 1235 cm -1 was a signal of phospholipids, which is based on the biochemical heterogeneity of outer membrane cell components [49], and peak 1068 cm -1 indicated carbohydrate in the bacteria, which is dominated by C-O-C and C-O ring vibrations in various polysaccharides [19]. These signals indicated the successful attachment of the magnetic nanoparticle complex on the Salmonella cell surface. Peaks at 1649 and 1542 cm -1 representing amide I band and amide II are also in the region of secondary structure protein in the cell [50], but the region was overlapped with the spectrum of the antibodies and of functionalized FMNs. They were not chosen as unique peaks. The peaks at 1454, and 1414 cm -1 of CH 2 scissoring, and C=O symmetric stretching of the COOgroup in amino acids and fatty acids were chosen as the unique peaks for the attachment of the FMN complex to Salmonella cells. Peaks of Salmonella and FMNs-Salmonella are as shown in Figure 4. In addition, the information of the fatty acid region can be derived from the responsible bands for -CH deformation in the 1500-1200 cm -1 area. For this experiment, the P=O asymmetric stretching at 1238 cm -1 shifted slightly to 1235 cm -1 indicating changes in the phospholipids of nanoparticle-exposed bacteria. Many studies reported that the decrease in peak intensity of phosphate groups was due to the sensitivity of hydration-dehydration of phosphoric groups in lipid structures. This mechanism is responsible for the changes in permeation in terms of the depletion in ATP levels that has been reported as a nanoparticle impact on bacteria [28]. Changes in the protein region in the range of 1800-1500 cm -1 of amide I and amide II of protein and peptide were observed. The amide I band represents C=O stretching vibration, and amide II band represents N-H bending with contributions from the C-N stretching vibrations of the peptide group [32]. In this study, the C=O stretching vibration of amide I at 1654 cm -1 shifting to 1649 cm -1 and the amide II at 1544 cm -1 shifting to 1542 cm -1 may signal a change from β-sheet to a random coil structure [51]. Metal nanoparticles could interact with the protein conformation in nanoparticle-treated bacteria by interacting with thiol groups of respiratory chain enzymes and other amino acid groups of bacteria membranes [28]. Changes in the carbohydrate region were observed between 900 and 1200 cm -1 and the C-O-C and C-O ring vibrations in various polysaccharides in the cell wall [32]. The profiles of polysaccharide bands after treatment with nanoparticles were changed. For this experiment, the peak at 1082 cm -1 disappeared after magnetic nanoparticle attachment with the target Salmonella cells but new bands showed up at 1068 cm -1 and 1017 cm -1 . These spectral changes were due to lipopolysaccharide peroxidation of the asymmetric outer membrane, amphipathic molecules, or lipopolysaccharides [28]. From overall results and discussion, the signal changes in each stage are shown in Figure 4 and Table 1.
The attachment of the FMN complex to Salmonella cells was demonstrated as a scanning micrograph of cells with FMNs in Figure 5. The captured cells could survive and produce colonies on xylose lysine desoxycholate agar.
However, many reports indicated that inherent characteristics of nanoparticles could lead to variability of reproducibility and consistency of the results. Surface functionalization of nanoparticles could be inconsistent. Complex particle syntheses could affect size and shape and their characteristics, for example, the surface to volume ratio that affects surface energy, solubility, and agglomeration [52]. An extensive review was made by Baer [53]. Results of X-ray Absorption Spectroscopy (XAS) studies of FMNs, in our laboratory, indicated changes of the electronic structure of FMNs after the attachment to Salmonella cells (data not shown). However, in this study, the FMNs were prepared fresh prior to the experiment. The polyol technique under low heat treatment in an autoclave could control the synthesis condition and produce FMNs with consistent characteristics [11]. The FMNs were stored in an airtight amber bottle to prevent exposure to light and oxygen. FTIR results from duplicated samples of this study appeared to be consistent.

Conclusion
This work demonstrated tracking of SR-FTIR signal changes of amino-functionalized FMN with GA crosslink, antibodies, and Salmonella cells individually and after reaction steps. Spectra of the controls, FMNs, glutaraldehyde, the antibody against Salmonella, and Salmonella cells alone were identified.
FMNs had a unique peak at wave number 1672 of NH bending (scissoring). The glutaraldehyde spectrum showed C=O stretching in the aldehyde peak at wave number 1722. Antibody against Salmonella had C=O stretching of amide I at 1656 cm -1 and NH-bending of amide II at 1545 cm -1 . Salmonella, on the other hand, showed a spectrum of C=O stretching vibration of amide I at 1649 cm -1 .
Signal changes of each attachment step are as follows. The FMN spectrum at wave number 1673 (N-H) reacted with the aldehyde group (1460 cm -1 ) of glutaraldehyde. The disappearance of peaks at 1763 and 1460 of FMN-GA proved this attachment. The peak at 1778 cm -1 in this stage indicated the availability of the aldehyde group on the FMN-GA complex. This aldehyde group is available for attachments to Ab in the next step. The FMNs-GA-Ab spectrum showed peaks at wave number 1244 (C-N stretching) indicating the attachment of the aldehyde group (GA) to an amino group (Ab). No peak at 1788 cm -1 also indicates the remaining aldehyde group attachment on Ab. At the final step, the FMN-GA-Ab complex attached to Salmonella cells. The attachment causes peaks at 1655 cm -1 C=O amine I to react with the NH 2 group of Ab resulting in CH 2 scissoring peak at 1454 cm -1 . No 1655 cm -1 peak was observed in this step.
The Synchrotron FTIR results revealed that the attachments of magnetic nanoparticles on the Salmonella cell 9 Journal of Nanomaterials surface gave specific peaks at 1542 and 1414 cm -1 of amide II band of protein and C=O symmetric stretching of the COOgroup in amino acid or fatty acids, respectively. The bands at 1244 cm -1 and 1454 cm -1 were unique to Ab-FMNs without and with the attachment of target cells. The rapid capture/concentration and isolation of the target Salmonella had unique SR-FTIR peaks, which could be used in various applications for rapid detection of target Salmonella and for the design of a generic machine for the rapid, noncontact, nondestructive, and culture-independent detection method/platform of pathogens in food products. The method may be extended to environmental and medical diagnosis in the future.

Data Availability
The data that support the finding of this study was available on request from the corresponding authors.

Conflicts of Interest
The authors declare that there is no conflict of interest regarding the publication of this paper.